emerge -vp
These are the packages that would be merged, in order:
Calculating dependencies ... done!
Dependency resolution took 7.18 s (backtrack: 1/20).
[nomerge ] sci-biology/bioperl-run-1.6.9-r1::gentoo USE="-minimal -test" PERL_FEATURES="ithreads (-debug) -quadmath"
[nomerge ] sci-biology/bioperl-1.6.9-r1::gentoo USE="db network run sqlite -graphviz -minimal -test" PERL_FEATURES="ithreads (-debug) -quadmath"
[ebuild N ] sci-biology/bioperl-network-1.6.9-r1::gentoo USE="-test" PERL_FEATURES="ithreads (-debug) -quadmath" 2147 KiB
[ebuild N ] sci-biology/bioperl-db-1.6.9-r2::gentoo USE="-test" PERL_FEATURES="ithreads (-debug) -quadmath" 482 KiB
[ebuild N ] dev-perl/Bio-ASN1-EntrezGene-1.730.0::gentoo USE="-examples -test" PERL_FEATURES="ithreads (-debug) -quadmath" 154 KiB
[ebuild N ] sci-biology/bioperl-run-1.6.9-r1::gentoo USE="-minimal -test" PERL_FEATURES="ithreads (-debug) -quadmath" 14206 KiB
[ebuild N ] sci-biology/bioperl-1.6.9-r1::gentoo USE="db network run sqlite -graphviz -minimal -test" PERL_FEATURES="ithreads (-debug) -quadmath" 11997 KiB
Total: 5 packages (5 new), Size of downloads: 28985 KiB
* Error: circular dependencies:
(dev-perl/Bio-ASN1-EntrezGene-1.730.0:0/0::gentoo, ebuild scheduled for merge) depends on
(sci-biology/bioperl-1.6.9-r1:0/0::gentoo, ebuild scheduled for merge) (buildtime)
(dev-perl/Bio-ASN1-EntrezGene-1.730.0:0/0::gentoo, ebuild scheduled for merge) (buildtime, USE=-minimal)
It might be possible to break this cycle
by applying the following change:
- sci-biology/bioperl-1.6.9-r1 (Change USE: +minimal)
Note that this change can be reverted, once the package has been installed.
!!! Multiple package instances within a single package slot have been pulled
!!! into the dependency graph, resulting in a slot conflict:
dev-lang/perl:0
(dev-lang/perl-5.44.0:0/5.44::gentoo, ebuild scheduled for merge) USE="gdbm -berkdb -doc -minimal" PERL_FEATURES="ithreads (-debug) -quadmath" pulled in by
=dev-lang/perl-5.44* required by (virtual/perl-Math-BigInt-2.5.3:0/0::gentoo, ebuild scheduled for merge) USE=""
^ ^^^^^
(and 6 more with the same problem)
(dev-lang/perl-5.42.2:0/5.42::gentoo, ebuild scheduled for merge) USE="gdbm -berkdb -doc -minimal" PERL_FEATURES="ithreads (-debug) -quadmath" pulled in by
dev-lang/perl:0/5.42= required by (virtual/perl-XSLoader-0.320.0-r2:0/0::gentoo, installed) USE=""
^^^^^^^^
dev-lang/perl:0/5.42= required by (virtual/perl-Data-Dumper-2.192.0:0/0::gentoo, installed) USE=""
^^^^^^^^
dev-lang/perl:0/5.42= required by (virtual/perl-Scalar-List-Utils-1.680.100_rc:0/0::gentoo, installed) USE=""
^^^^^^^^
dev-lang/perl:0/5.42= required by (virtual/perl-File-Path-2.180.0-r4:0/0::gentoo, installed) USE=""
^^^^^^^^
dev-lang/perl:0/5.42= required by (virtual/perl-Digest-MD5-2.590.0:0/0::gentoo, installed) USE=""
^^^^^^^^
dev-lang/perl:0/5.42= required by (virtual/perl-MIME-Base64-3.160.100_rc-r2:0/0::gentoo, installed) USE=""
^^^^^^^^
dev-lang/perl:0/5.42= required by (virtual/perl-Carp-1.540.0-r2:0/0::gentoo, installed) USE=""
^^^^^^^^
dev-lang/perl:0/5.42= required by (virtual/perl-JSON-PP-4.160.0-r3:0/0::gentoo, installed) USE=""
^^^^^^^^
dev-lang/perl:0/5.42= required by (virtual/perl-podlators-6.0.2:0/0::gentoo, installed) USE=""
^^^^^^^^
dev-lang/perl:0/5.42= required by (virtual/perl-Text-ParseWords-3.310.0-r4:0/0::gentoo, installed) USE=""
^^^^^^^^
dev-lang/perl:0/5.42= required by (virtual/perl-Exporter-5.790.0:0/0::gentoo, installed) USE=""
^^^^^^^^
dev-lang/perl:0/5.42= required by (virtual/perl-Digest-SHA-6.40.0-r2:0/0::gentoo, installed) USE=""
^^^^^^^^
=dev-lang/perl-5.42* required by (virtual/perl-File-Spec-3.940.0:0/0::gentoo, installed) USE=""
^ ^^^^^
dev-lang/perl:0/5.42= required by (virtual/perl-libnet-3.150.0-r2:0/0::gentoo, installed) USE="ssl"
^^^^^^^^
dev-lang/perl:0/5.42= required by (virtual/perl-Time-Local-1.350.0-r1:0/0::gentoo, installed) USE=""
^^^^^^^^
(and 39 more with the same problems)
NOTE: Use the '--verbose-conflicts' option to display parents omitted above
!!! The slot conflict(s) shown above involve package(s) which may need to
!!! be rebuilt in order to solve the conflict(s). However, the following
!!! package(s) cannot be rebuilt for the reason(s) shown:
(virtual/perl-JSON-PP-4.160.0-r3:0/0::gentoo, installed): ebuild is masked or unavailable
(virtual/perl-File-Path-2.180.0-r4:0/0::gentoo, installed): ebuild is masked or unavailable
(virtual/perl-libnet-3.150.0-r2:0/0::gentoo, installed): ebuild is masked or unavailable
(virtual/perl-Carp-1.540.0-r2:0/0::gentoo, installed): ebuild is masked or unavailable
(virtual/perl-XSLoader-0.320.0-r2:0/0::gentoo, installed): ebuild is masked or unavailable
(virtual/perl-MIME-Base64-3.160.100_rc-r2:0/0::gentoo, installed): ebuild is masked or unavailable
(virtual/perl-Digest-MD5-2.590.0:0/0::gentoo, installed): ebuild is masked or unavailable
(virtual/perl-Time-Local-1.350.0-r1:0/0::gentoo, installed): ebuild is masked or unavailable
(virtual/perl-podlators-6.0.2:0/0::gentoo, installed): ebuild is masked or unavailable
(virtual/perl-Text-ParseWords-3.310.0-r4:0/0::gentoo, installed): ebuild is masked or unavailable
(virtual/perl-Exporter-5.790.0:0/0::gentoo, installed): ebuild is masked or unavailable
(virtual/perl-Digest-SHA-6.40.0-r2:0/0::gentoo, installed): ebuild is masked or unavailable
(virtual/perl-Data-Dumper-2.192.0:0/0::gentoo, installed): ebuild is masked or unavailable
It may be possible to solve this problem by using package.mask to
prevent one of those packages from being selected. However, it is also
possible that conflicting dependencies exist such that they are
impossible to satisfy simultaneously. If such a conflict exists in
the dependencies of two different packages, then those packages can
not be installed simultaneously.
For more information, see MASKED PACKAGES section in the emerge man
page or refer to the Gentoo Handbook.
The following packages are causing rebuilds:
(dev-lang/perl-5.44.0:0/5.44::gentoo, ebuild scheduled for merge) causes rebuilds for:
(dev-perl/Graph-0.973.500:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Pod-Parser-1.660.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Math-Random-0.750.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Try-Tiny-0.320.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/PlRPC-0.202.0-r4:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Feature-Compat-Class-0.80.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/XML-XPathEngine-0.140.0-r2:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Statistics-Descriptive-3.80.100:0/0::gentoo, ebuild scheduled for merge)
(app-text/po4a-0.74-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Capture-Tiny-0.500.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Socket6-0.290.0-r2:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Params-Util-1.102.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Devel-Caller-2.70.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/libwww-perl-6.810.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/XML-NamespaceSupport-1.120.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/MailTools-2.220.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/ExtUtils-InstallPaths-0.15.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/List-MoreUtils-XS-0.430.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/ExtUtils-Helpers-0.28.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Clone-0.470.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Encode-Locale-1.50.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Sub-Quote-2.6.9:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/HTTP-Message-7.10.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/SVG-2.870.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/ExtUtils-Config-0.10.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Moo-2.5.5:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Class-Inspector-1.360.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/ExtUtils-PkgConfig-1.160.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/DBI-1.652.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/XS-Parse-Keyword-0.490.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/TimeDate-2.330.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/XML-Writer-0.900.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/YAML-Tiny-1.760.0-r1:0/0::gentoo, ebuild scheduled for merge)
(virtual/perl-Sys-Syslog-0.360.0-r6:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Algorithm-Diff-1.201.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Math-Spline-0.20.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/HTML-Tagset-3.240.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Authen-SASL-2.200.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Path-Class-0.370.0-r2:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/IO-SessionData-1.30.0-r2:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Exporter-Tiny-1.6.3:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Bio-ASN1-EntrezGene-1.730.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/MIME-Charset-1.13.1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/IO-Socket-SSL-2.95.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/File-Which-1.270.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/XML-RegExp-0.40.0-r2:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/XML-SAX-1.20.0-r2:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Config-AutoConf-0.320.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Type-Tiny-2.8.4:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Devel-StackTrace-2.50.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Role-Tiny-2.2.4:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/ExtUtils-CChecker-0.120.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-vcs/git-2.56.0:0/0::gentoo, ebuild scheduled for merge)
(sci-biology/bioperl-run-1.6.9-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Digest-HMAC-1.50.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/PostScript-0.60.0-r2:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/XS-Parse-Sublike-0.410.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Task-Weaken-1.60.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Readonly-2.50.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Data-Stag-0.140.0-r2:0/0::gentoo, ebuild scheduled for merge)
(sci-biology/bioperl-network-1.6.9-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Regexp-Util-0.5.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Text-WrapI18N-0.60.0-r3:0/0::gentoo, ebuild scheduled for merge)
(virtual/perl-Encode-3.240.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/PerlIO-utf8_strict-0.10.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Devel-LexAlias-0.50.0-r2:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/IO-Tty-1.200.0:0/0::gentoo, ebuild scheduled for merge)
(perl-core/File-Temp-0.231.200:0/0::gentoo, ebuild scheduled for merge)
(virtual/perl-File-Temp-0.231.200:0/0::gentoo, ebuild scheduled for merge)
(virtual/perl-CPAN-2.380.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Unicode-Map-0.112.0-r2:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/IO-String-1.80.0-r3:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/DBD-mysql-5.13.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Set-Scalar-1.290.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Net-HTTP-6.240.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/IO-stringy-2.113.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Object-Pad-0.825.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/HTTP-Cookies-6.110.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/IPC-Run-20250809.0.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/MIME-tools-5.517.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Crypt-URandom-0.550.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/File-ShareDir-Install-0.140.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/GD-2.830.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/SOAP-Lite-1.270.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/XML-DOM-XPath-0.140.0-r3:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Module-Build-Tiny-0.52.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Type-Tiny-XS-0.25.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/HTML-Parser-3.830.0:0/0::gentoo, ebuild scheduled for merge)
(sci-biology/bioperl-1.6.9-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/URI-5.340.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Syntax-Keyword-Try-0.310.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/PadWalker-2.500.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Text-CSV_XS-1.620.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/OLE-StorageLite-0.220.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Devel-CheckLib-1.160.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/IO-HTML-1.4.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/XML-Twig-3.540.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Locale-gettext-1.70.0_p20181130:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/File-ShareDir-1.118.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/XML-DOM-1.460.0-r2:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Spreadsheet-ParseExcel-0.660.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Crypt-SSLeay-0.720.0-r4:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/TermReadKey-2.380.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Algorithm-Munkres-0.80.0-r2:0/0::gentoo, ebuild scheduled for merge)
(sci-biology/bioperl-db-1.6.9-r2:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/CPAN-Meta-Requirements-2.145.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/XML-XPath-1.480.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/File-Listing-6.160.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Digest-Perl-MD5-1.900.0-r2:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/MIME-Base32-1.303.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Regexp-IPv6-0.30.0-r2:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Net-SSLeay-1.960.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Text-CharWidth-0.40.0-r2:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Net-Daemon-0.490.0:0/0::gentoo, ebuild scheduled for merge)
(virtual/perl-Math-BigInt-2.5.3:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/HTTP-Date-6.80.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/HTTP-Negotiate-6.10.0-r2:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Tree-DAG_Node-1.350.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/LWP-Protocol-https-6.140.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Set-Object-1.430.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/XML-SAX-Expat-0.510.0-r3:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/IO-Socket-INET6-2.730.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/File-Sort-1.10.0-r3:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Sort-Naturally-1.30.0-r2:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/XML-Simple-2.250.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/XML-Parser-2.470.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/File-Slurper-0.14.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/DBD-SQLite-1.780.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Convert-Binary-C-0.860.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/XML-SAX-Base-1.90.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/ExtUtils-HasCompiler-0.25.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/LWP-MediaTypes-6.40.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Text-Iconv-1.700.0-r3:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/WWW-RobotRules-6.20.0-r2:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Unicode-LineBreak-2019.1.0-r2:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/List-MoreUtils-0.430.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Math-Derivative-1.10.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Heap-0.800.0-r3:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Tie-IxHash-1.230.0-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Crypt-RC4-2.20.0-r2:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Module-Build-0.423.400-r5:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/CPAN-Requirements-Dynamic-0.1.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/SVG-Graph-0.40.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Ref-Util-XS-0.117.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Error-0.170.300-r1:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/YAML-1.310.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Class-XSAccessor-1.190.0-r3:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Class-Method-Modifiers-2.150.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/Array-Compare-4.0.0:0/0::gentoo, ebuild scheduled for merge)
(dev-perl/SGMLSpm-1.1-r2:0/0::gentoo, ebuild scheduled for merge)