portage-ng --merge
>>> Emerging : portage://sci-chemistry/vmd-1.9.4_alpha57-r4:run?{[]}
These are the packages that would be merged, in order:
Calculating dependencies... done!
└─step 1─┤ license portage://sci-biology/stride-20060723
│ license portage://sci-chemistry/surf-1.0
│ license portage://sci-chemistry/vmd-1.9.4_alpha57-r4
│ useflag portage://app-text/xmlto-0.0.28-r11 (text)
│ useflag portage://sci-libs/hdf5-2.2.0 (-threads)
└─step 2─┤ download portage://app-text/xmlto-0.0.28-r11
│ └─ file ─┤ 124.92 Kb xmlto-0.0.28.tar.bz2
│ download portage://dev-lang/tk-8.6.17
│ └─ file ─┤ 4.38 Mb tk8.6.17-src.tar.gz
│ download portage://dev-libs/libzip-1.12.1
│ └─ file ─┤ 794.32 Kb libzip-1.12.1.tar.xz
│ download portage://dev-python/cython-3.3.0
│ └─ file ─┤ 3.55 Mb cython-3.3.0.tar.gz
│ download portage://dev-python/flit-core-4.1.0
│ └─ file ─┤ 53.40 Kb flit_core-4.1.0.tar.gz
│ download portage://dev-python/gpep517-23
│ └─ file ─┤ 30.63 Kb gpep517-23.gh.tar.gz
│ download portage://dev-python/installer-1.1.0
│ └─ file ─┤ 453.58 Kb installer-1.1.0-py3-none-any.whl
│ │ 469.98 Kb installer-1.1.0.tar.gz
│ download portage://dev-python/jaraco-context-6.1.2
│ └─ file ─┤ 16.41 Kb jaraco_context-6.1.2.tar.gz
│ download portage://dev-python/jaraco-functools-4.6.0
│ └─ file ─┤ 20.35 Kb jaraco_functools-4.6.0.tar.gz
│ download portage://dev-python/jaraco-text-4.3.0
│ └─ file ─┤ 20.19 Kb jaraco_text-4.3.0.tar.gz
│ download portage://dev-python/meson-python-0.22.1
│ └─ file ─┤ 110.78 Kb meson-python-0.22.1.gh.tar.gz
│ download portage://dev-python/more-itertools-11.2.1
│ └─ file ─┤ 150.52 Kb more_itertools-11.2.1.tar.gz
│ download portage://dev-python/numpy-2.5.4
│ └─ file ─┤ 19.90 Mb numpy-2.5.4.tar.gz
│ download portage://dev-python/packaging-26.3
│ └─ file ─┤ 306.07 Kb packaging-26.3.tar.gz
│ download portage://dev-python/platformdirs-4.13.5
│ └─ file ─┤ 60.90 Kb platformdirs-4.13.5.tar.gz
│ download portage://dev-python/pyproject-metadata-0.12.1
│ └─ file ─┤ 47.32 Kb pyproject_metadata-0.12.1.tar.gz
│ download portage://dev-python/setuptools-84.0.0
│ └─ file ─┤ 1.11 Mb setuptools-84.0.0.tar.gz
│ download portage://dev-python/wheel-0.48.0
│ └─ file ─┤ 64.91 Kb wheel-0.48.0.tar.gz
│ download portage://dev-util/intltool-0.51.0-r3
│ └─ file ─┤ 158.48 Kb intltool-0.51.0.tar.gz
│ download portage://media-fonts/font-alias-1.0.6
│ └─ file ─┤ 98.53 Kb font-alias-1.0.6.tar.xz
│ download portage://media-fonts/font-misc-misc-1.1.3
│ └─ file ─┤ 1.49 Mb font-misc-misc-1.1.3.tar.xz
│ download portage://media-fonts/font-util-1.4.2
│ └─ file ─┤ 149.18 Kb font-util-1.4.2.tar.xz
│ download portage://sci-biology/stride-20060723
│ └─ file ─┤ 311.52 Kb stride-20030408.tar.gz
│ │ 5.75 Kb stride-20060723-update-r1.patch.xz
│ download portage://sci-chemistry/chemical-mime-data-0.1.95_pre20171122
│ └─ file ─┤ 82.53 Kb chemical-mime-data-0.1.95_pre20171122.tar.gz
│ download portage://sci-chemistry/surf-1.0
│ └─ file ─┤ 72.60 Kb surf-1.0.tar.Z
│ download portage://sci-chemistry/vmd-1.9.4_alpha57-r4
│ └─ file ─┤ 14.27 Kb vmd-1.9.4_alpha57-gentoo-patches.tar.xz
│ │ 41.16 Mb vmd-1.9.4a57.src.tar.gz
│ download portage://sci-libs/blas-lapack-aux-wrapper-6
│ └─ file ─┤ 9.31 Kb blas-lapack-aux-wrapper-6.tar.xz
│ download portage://sci-libs/flexiblas-3.5.0
│ └─ file ─┤ 78.85 Mb flexiblas-release-v3.5.0.tar.bz2
│ download portage://sci-libs/hdf5-2.2.0
│ └─ file ─┤ 40.18 Mb hdf5-2.2.0.tar.gz
│ download portage://sci-libs/lapack-3.12.1-r2
│ └─ file ─┤ 7.69 Mb lapack-3.12.1.tar.gz
│ download portage://sci-libs/netcdf-4.10.1-r1
│ └─ file ─┤ 12.74 Mb netcdf-c-4.10.1.tar.gz
│ download portage://sci-libs/openblas-0.3.34
│ └─ file ─┤ 24.15 Mb OpenBLAS-0.3.34.tar.gz
│ download portage://sys-libs/libutempter-1.2.1
│ └─ file ─┤ 17.02 Kb libutempter-1.2.1.tar.gz
│ download portage://x11-apps/bdftopcf-1.1.2
│ └─ file ─┤ 142.76 Kb bdftopcf-1.1.2.tar.xz
│ download portage://x11-apps/fonttosfnt-1.2.5
│ └─ file ─┤ 141.45 Kb fonttosfnt-1.2.5.tar.xz
│ download portage://x11-apps/luit-20240910
│ └─ file ─┤ 207.66 Kb luit-20240910.tgz
│ download portage://x11-apps/rgb-1.1.1
│ └─ file ─┤ 134.70 Kb rgb-1.1.1.tar.xz
│ download portage://x11-apps/xmessage-1.0.7
│ └─ file ─┤ 125.95 Kb xmessage-1.0.7.tar.xz
│ download portage://x11-apps/xprop-1.2.8
│ └─ file ─┤ 143.94 Kb xprop-1.2.8.tar.xz
│ download portage://x11-apps/xset-1.2.6
│ └─ file ─┤ 142.69 Kb xset-1.2.6.tar.xz
│ download portage://x11-libs/fltk-1.4.5
│ └─ file ─┤ 8.07 Mb fltk-1.4.5-source.tar.bz2
│ download portage://x11-libs/libXcursor-1.2.3
│ └─ file ─┤ 285.90 Kb libXcursor-1.2.3.tar.xz
│ download portage://x11-libs/libXinerama-1.1.6
│ └─ file ─┤ 262.15 Kb libXinerama-1.1.6.tar.xz
│ download portage://x11-libs/libxkbfile-1.2.0
│ └─ file ─┤ 56.50 Kb libxkbfile-1.2.0.tar.xz
│ download portage://x11-misc/util-macros-1.20.2
│ └─ file ─┤ 81.63 Kb util-macros-1.20.2.tar.xz
│ download portage://x11-misc/xdg-utils-1.2.1-r11
│ └─ file ─┤ 286.51 Kb xdg-utils-v1.2.1.tar.bz2
│ download portage://x11-terms/xterm-411
│ └─ file ─┤ 1.56 Mb xterm-411.tgz
└─step 3─┤ install portage://dev-lang/tk-8.6.17
│ └─ conf ─┤ USE = "threads* truetype* -debug -test -xscreensaver"
│ │ SLOT = "0/8.6"
│ install portage://dev-libs/libzip-1.12.1
│ └─ conf ─┤ USE = "bzip2 ssl -gnutls -lzma -test -tools -zstd"
│ │ SLOT = "0/5"
│ install portage://sci-libs/hdf5-2.2.0 (USE modified)
│ └─ conf ─┤ USE = "-threads zlib hl -cxx -debug -fortran -mpi -szip -test -unsupported"
│ │ SLOT = "0/320-cmake"
│ install portage://virtual/fortran-0-r1
│ └─ conf ─┤ USE = "openmp"
│ install portage://x11-apps/luit-20240910
│ └─ conf ─┤ USE = "-verify-sig"
│ install portage://x11-apps/xmessage-1.0.7
│ install portage://x11-libs/libXcursor-1.2.3
│ └─ conf ─┤ USE = "-doc"
│ install portage://x11-libs/libXinerama-1.1.6
│ └─ conf ─┤ USE = "-doc"
│ install portage://x11-libs/libxkbfile-1.2.0
│ install portage://media-fonts/font-util-1.4.2
│ install portage://sci-biology/stride-20060723 (license)
│ install portage://x11-apps/xprop-1.2.8
│ install portage://x11-apps/xset-1.2.6
│ install portage://dev-util/intltool-0.51.0-r3
│ install portage://x11-apps/bdftopcf-1.1.2
│ install portage://x11-apps/fonttosfnt-1.2.5
│ install portage://x11-misc/util-macros-1.20.2
│ update portage://app-text/xmlto-0.0.28-r11 (USE modified)
│ └─ conf ─┤ USE = "-latex text"
│ update portage://dev-python/installer-1.1.0 (replaces pkg://dev-python/installer-0.7.0)
│ └─ conf ─┤ USE = "-test -verify-provenance%"
│ │ PYTHON_TARGETS = "python3_14 -pypy3_12% -python3_12 -python3_13* -python3_14t"
└─step 4─┤ install portage://sys-libs/libutempter-1.2.1
│ └─ conf ─┤ USE = "-static-libs"
│ install portage://sci-chemistry/surf-1.0 (license)
│ run portage://dev-lang/tk-8.6.17
│ run portage://dev-libs/libzip-1.12.1
│ run portage://sci-biology/stride-20060723 (license)
│ run portage://sci-libs/hdf5-2.2.0 (USE modified)
│ run portage://virtual/fortran-0-r1
│ run portage://x11-apps/luit-20240910
│ run portage://x11-apps/xmessage-1.0.7
│ run portage://x11-apps/xprop-1.2.8
│ run portage://x11-apps/xset-1.2.6
│ run portage://x11-libs/libXcursor-1.2.3
│ run portage://x11-libs/libXinerama-1.1.6
│ run portage://x11-libs/libxkbfile-1.2.0
└─step 5─┤ install portage://media-fonts/font-alias-1.0.6
│ install portage://media-fonts/font-misc-misc-1.1.3
│ └─ conf ─┤ USE = "X* nls opentype-compat"
│ install portage://sci-chemistry/chemical-mime-data-0.1.95_pre20171122
│ install portage://x11-apps/rgb-1.1.1
│ update portage://dev-python/gpep517-23 (replaces pkg://dev-python/gpep517-19)
│ └─ conf ─┤ USE = "-test"
│ │ PYTHON_TARGETS = "python3_14 -python3_12 -python3_13*"
│ run portage://sci-chemistry/surf-1.0 (license)
│ run portage://sys-libs/libutempter-1.2.1
└─step 6─┤ install portage://sci-libs/lapack-3.12.1-r2 (blocked: soft by sci-libs/blas-lapack-aux-wrapper)
│ └─ conf ─┤ USE = "deprecated flexiblas lapacke -doc -eselect-ldso -index64 -test"
│ install portage://sci-libs/netcdf-4.10.1-r1
│ └─ conf ─┤ USE = "bzip2 dap hdf5 -blosc -doc -examples -hdf -logging -mpi -szip -test -zstd"
│ │ SLOT = "0/22"
│ install portage://sci-libs/openblas-0.3.34
│ └─ conf ─┤ USE = "openmp -cpudetection -index64 -pthread -relapack -test"
│ install portage://x11-libs/fltk-1.4.5
│ └─ conf ─┤ USE = "X* cairo* dbus* opengl* (static-libs) -doc -examples -test -wayland"
│ │ SLOT = "1/1.4"
│ install portage://x11-misc/xdg-utils-1.2.1-r11
│ └─ conf ─┤ USE = "X* dbus* -doc -gnome -perl -plasma"
│ run portage://media-fonts/font-alias-1.0.6
│ run portage://sci-chemistry/chemical-mime-data-0.1.95_pre20171122
│ run portage://x11-apps/rgb-1.1.1
└─step 7─┤ update portage://dev-python/flit-core-4.1.0 (replaces pkg://dev-python/flit-core-3.12.0)
│ └─ conf ─┤ USE = "-test -verify-provenance%"
│ │ PYTHON_TARGETS = "python3_14 -pypy3_12% -python3_12 -python3_13* -python3_14t"
│ run portage://sci-libs/lapack-3.12.1-r2 (blocked: soft by sci-libs/blas-lapack-aux-wrapper)
│ run portage://media-fonts/font-misc-misc-1.1.3
│ run portage://sci-libs/netcdf-4.10.1-r1
│ run portage://sci-libs/openblas-0.3.34
│ run portage://x11-libs/fltk-1.4.5
│ run portage://x11-misc/xdg-utils-1.2.1-r11
└─step 8─┤ install portage://sci-libs/flexiblas-3.5.0
│ └─ conf ─┤ USE = "openmp openblas system-blas (-blis) (-mkl) -index64 -tbb -test"
│ install portage://x11-terms/xterm-411
│ └─ conf ─┤ USE = "truetype* unicode openpty -Xaw3d -sixel -toolbar -verify-sig -xinerama"
│ update portage://dev-python/packaging-26.3 (replaces pkg://dev-python/packaging-26.0)
│ └─ conf ─┤ USE = "-test -verify-provenance"
│ │ PYTHON_TARGETS = "python3_14 -python3_12 -python3_13*"
└─step 9─┤ update portage://dev-python/more-itertools-11.2.1 (replaces pkg://dev-python/more-itertools-10.8.0)
│ └─ conf ─┤ USE = "-doc"
│ │ PYTHON_TARGETS = "python3_14 -pypy3_12% -python3_12 -python3_13* -python3_14t"
│ run portage://sci-libs/flexiblas-3.5.0
│ update portage://dev-python/platformdirs-4.13.5 (replaces pkg://dev-python/platformdirs-4.9.4)
│ └─ conf ─┤ USE = "-test -verify-provenance"
│ │ PYTHON_TARGETS = "python3_14 -pypy3_12% -python3_12 -python3_13* -python3_14t"
│ update portage://dev-python/jaraco-context-6.1.2 (replaces pkg://dev-python/jaraco-context-6.1.1)
│ └─ conf ─┤ USE = "-test"
│ │ PYTHON_TARGETS = "python3_14 -python3_12 -python3_13*"
│ run portage://x11-terms/xterm-411
└─step 10─┤ update portage://dev-python/pyproject-metadata-0.12.1 (replaces pkg://dev-python/pyproject-metadata-0.11.0)
│ └─ conf ─┤ USE = "-test -verify-provenance"
│ │ PYTHON_TARGETS = "python3_14 -python3_12 -python3_13*"
│ update portage://dev-python/wheel-0.48.0 (replaces pkg://dev-python/wheel-0.46.3)
│ └─ conf ─┤ USE = "-test -verify-provenance"
│ │ PYTHON_TARGETS = "python3_14 -python3_12 -python3_13*"
└─step 11─┤ install portage://sci-libs/blas-lapack-aux-wrapper-6
│ └─ conf ─┤ USE = "-index64 -test"
│ update portage://dev-python/jaraco-functools-4.6.0 (replaces pkg://dev-python/jaraco-functools-4.4.0)
│ └─ conf ─┤ USE = "-test"
│ │ PYTHON_TARGETS = "python3_14 -python3_12 -python3_13*"
└─step 12─┤ install portage://dev-python/meson-python-0.22.1
│ └─ conf ─┤ USE = "-test"
│ │ PYTHON_TARGETS = "python3_14 -python3_12 -python3_13"
│ run portage://sci-libs/blas-lapack-aux-wrapper-6
└─step 13─┤ update portage://dev-python/jaraco-text-4.3.0 (replaces pkg://dev-python/jaraco-text-4.2.0)
│ └─ conf ─┤ USE = "-test"
│ │ PYTHON_TARGETS = "python3_14 -python3_12 -python3_13*"
└─step 14─┤ install portage://virtual/cblas-3.8-r1
│ └─ conf ─┤ USE = "flexiblas -eselect-ldso -index64"
│ install portage://virtual/lapack-3.10-r1
│ └─ conf ─┤ USE = "flexiblas -eselect-ldso -index64"
└─step 15─┤ update portage://dev-python/setuptools-84.0.0 (replaces pkg://dev-python/setuptools-81.0.0)
│ └─ conf ─┤ USE = "-test"
│ │ PYTHON_TARGETS = "python3_14 -python3_12 -python3_13*"
│ run portage://virtual/cblas-3.8-r1
│ run portage://virtual/lapack-3.10-r1
└─step 16─┤ update portage://dev-python/cython-3.3.0 (replaces pkg://dev-python/cython-3.2.4)
│ └─ conf ─┤ USE = "-debug -test -test-full"
│ │ PYTHON_TARGETS = "python3_14 -python3_12 -python3_13*"
└─step 17─┤ install portage://dev-python/numpy-2.5.4
│ └─ conf ─┤ USE = "cpudetection lapack (-index64) -debug -test -verify-provenance"
│ │ CPU_FLAGS_X86 = "avx2 avx512bw avx512dq avx512vl sse4_2* -avx512_bf16 -avx512_bitalg -avx512_fp16 -avx512_vbmi2"
│ │ PYTHON_TARGETS = "python3_14 -python3_12 -python3_13"
│ │ SLOT = "0/2"
└─step 18─┤ run portage://dev-python/numpy-2.5.4
└─step 19─┤ install portage://sci-chemistry/vmd-1.9.4_alpha57-r4 (license)
│ └─ conf ─┤ USE = "sqlite* -cuda -gromacs -msms -povray -tachyon -xinerama"
│ │ PYTHON_SINGLE_TARGET = "python3_14 -python3_12 -python3_13"
└─step 20─┤ run portage://sci-chemistry/vmd-1.9.4_alpha57-r4
Total: 132 actions (3 licenses, 2 useflags, 47 downloads, 36 installs, 14 updates, 30 runs), grouped into 20 steps.
250.37 Mb to be downloaded.
>>> Assumptions taken during proving & planning:
License acceptance (3 packages):
Add to /etc/portage/package.license:
==sci-biology/stride-20060723 STRIDE
==sci-chemistry/surf-1.0 SURF
==sci-chemistry/vmd-1.9.4_alpha57-r4 vmd
USE flag change (2 packages):
Add to /etc/portage/package.use:
app-text/xmlto text
sci-libs/hdf5 -threads
>>> Blockers added during proving & planning:
[blocks B] !sci-libs/lapack (soft blocker, phase: install, required by: portage://sci-libs/blas-lapack-aux-wrapper-6)
[blocks B] !sci-libs/lapack (soft blocker, phase: run, required by: portage://sci-libs/blas-lapack-aux-wrapper-6)
[blocks B] !sci-libs/lapack (soft blocker, phase: run, required by: portage://sci-libs/flexiblas-3.5.0)